.gitattributes
.gitignore
bin/pheno-ranker
Changes
cpanfile
docker/Dockerfile
docker/README.md
lib/Pheno/Ranker.pm
lib/Pheno/Ranker/CLI.pm
lib/Pheno/Ranker/Compare.pm
lib/Pheno/Ranker/Compare/Alignment.pm
lib/Pheno/Ranker/Compare/Encoding.pm
lib/Pheno/Ranker/Compare/Matrix.pm
lib/Pheno/Ranker/Compare/Ontology.pm
lib/Pheno/Ranker/Compare/Prepare.pm
lib/Pheno/Ranker/Compare/Prune.pm
lib/Pheno/Ranker/Compare/Rank.pm
lib/Pheno/Ranker/Compare/Remap.pm
lib/Pheno/Ranker/Config.pm
lib/Pheno/Ranker/Context.pm
lib/Pheno/Ranker/Graph.pm
lib/Pheno/Ranker/IO.pm
lib/Pheno/Ranker/Metrics.pm
lib/Pheno/Ranker/Options.pm
LICENSE
Makefile.PL
MANIFEST			This list of files
mkdocs.yml
non-containerized/README.md
README.md.template
requirements.txt
share/conf/config.yaml
share/db/hp.json
share/db/README.md
share/diseases/hpo/omim.bff.json.gz
share/diseases/hpo/omim.pxf.json.gz
share/diseases/hpo/orpha.bff.json.gz
share/diseases/hpo/orpha.pxf.json.gz
share/diseases/hpo/README.md
share/diseases/hpo/scripts/hpo_disease_converter.pl
t/00-modules.t
t/01-ranker.t
t/02-json-ranking.t
t/03-graph-cli.t
t/04-errors.t
t/05-weights.t
t/06-csv2pheno-ranker.t
t/07-bff-pxf-simulator.t
t/09-cli.t
t/data/cars.json
t/data/cars_config.yaml
t/data/cars_matrix.txt
t/data/example.csv
t/data/example_config_ref.yaml
t/data/example_ref.json
t/data/export.coverage_stats.json
t/data/export.glob_hash.json
t/data/export.ref_binary_hash.json
t/data/export.ref_hash.json
t/data/graph.json
t/data/graph_stats.txt
t/data/individuals.json
t/data/individuals.json.gz
t/data/individuals_random_100.json
t/data/individuals_random_100_ontologies.json
t/data/inter_cohort_matrix_ref.txt
t/data/interpretations_pxf.json
t/data/matrix_ref.txt
t/data/matrix_ref_interpretations_pxf.txt
t/data/matrix_ref_jaccard.txt
t/data/matrix_ref_weights_zero.txt
t/data/movies.json
t/data/movies_config.yaml
t/data/movies_weights.yaml
t/data/ontologies.yaml
t/data/output.json
t/data/patient.json
t/data/pxf_excluded_true.json
t/data/pxf_excluded_true_matrix.txt
t/data/pxf_random_100.json
t/data/qr_codes/107_week_0_arm_1.compressed.png
t/data/qr_codes/107_week_0_arm_1.pdf
t/data/qr_codes/107_week_0_arm_1.png
t/data/qr_codes/output.compressed.json
t/data/qr_codes/output.json
t/data/rank.txt
t/data/ref_align.csv
t/data/ref_align.target.csv
t/data/ref_align.txt
t/data/ref_movies_include_matrix.txt
t/data/ref_movies_matrix.txt
t/data/ref_movies_weights_matrix.txt
t/data/weights.yaml
t/data/weights_err1.yaml
t/data/weights_err2.yaml
t/data/weights_zero.yaml
t/lib/Test/PhenoRanker.pm
utils/bff_pxf_simulator/bff-pxf-simulator
utils/bff_pxf_simulator/Ontologies.pm
utils/csv2pheno_ranker/csv2pheno-ranker
VERSION
META.yml                                 Module YAML meta-data (added by MakeMaker)
META.json                                Module JSON meta-data (added by MakeMaker)
